Publications

For full list of my publications, please refer to my google scholar.

Recent

Integration of spatial and single-cell data across modalities with weakly linked features
Shuxiao Chen*, Bokai Zhu*, Sijia Huang, John W. Hickey, Kevin Z. Lin, Michael Snyder, William J. Greenleaf, Garry P. Nolan#, Nancy R. Zhang# & Zongming Ma#
Nature Biotechnology (2023)

Expanded vacuum-stable gels for multiplexed high-resolution spatial histopathology
Yunhao Bai, Bokai Zhu, John-Paul Oliveria, Bryan J. Cannon, Dorien Feyaerts, Marc Bosse, Kausalia Vijayaragavan, Noah F. Greenwald, Darci Phillips, Christian M. Schürch, Samuel M. Naik, Edward A. Ganio, Brice Gaudilliere, Scott J. Rodig, Michael B. Miller, Michael Angelo, Sean C. Bendall, Xavier Rovira-Clavé#, Garry P. Nolan# & Sizun Jiang#
Nature Communications (2023)

Robust single-cell matching and multimodal analysis using shared and distinct features
Bokai Zhu*, Shuxiao Chen*, Yunhao Bai, Han Chen, Guanrui Liao, Nilanjan Mukherjee, Gustavo Vazquez, David R. McIlwain, Alexandar Tzankov, Ivan T. Lee, Matthias S. Matter, Yury Goltsev, Zongming Ma#, Garry P. Nolan# & Sizun Jiang#
Nature Methods (2023)

Organization of the human intestine at single-cell resolution
John W. Hickey*, Winston R. Becker*, Stephanie A. Nevins*, Aaron Horning, Almudena Espin Perez, Chenchen Zhu, Bokai Zhu, Bei Wei, Roxanne Chiu, Derek C. Chen, Daniel L. Cotter, Edward D. Esplin, Annika K. Weimer, Chiara Caraccio, Vishal Venkataraaman, Christian M. Schürch, Sarah Black, Maria Brbić, Kaidi Cao, Shuxiao Chen, Weiruo Zhang, Emma Monte, Nancy R. Zhang, Zongming Ma, Jure Leskovec, Zhengyan Zhang, Shin Lin, Teri Longacre, Sylvia K. Plevritis, Yiing Lin, Garry P. Nolan #, William J. Greenleaf# & Michael Snyder#
Nature (2023)

Spatial epitope barcoding reveals clonal tumor patch behaviors
Xavier Rovira-Clavé*, Alexandros P Drainas*, Sizun Jiang*, Yunhao Bai, Maya Baron, Bokai Zhu, Alec E Dallas, Myung Chang Lee, Theresa P Chu, Alessandra Holzem, Ramya Ayyagari, Debadrita Bhattacharya, Erin F McCaffrey, Noah F Greenwald, Maxim Markovic, Garry L Coles, Michael Angelo, Michael C Bassik, Julien Sage#, Garry P Nolan#
Cancer Cell (2022)

Combined protein and nucleic acid imaging reveals virus-dependent B cell and macrophage immunosuppression of tissue microenvironments
Sizun Jiang*, Chi Ngai Chan*, Xavier Rovira-Clavé*, Han Chen, Yunhao Bai, Bokai Zhu, Erin McCaffrey, Noah F Greenwald, Candace Liu, Graham L Barlow, Jason L Weirather, John Paul Oliveria, Tsuguhisa Nakayama, Ivan T Lee, Matthias S Matter, Anne E Carlisle, Darci Philips, Gustavo Vazquez, Nilanjan Mukherjee, Kathleen Busman-Sahay, Michael Nekorchuk, Margaret Terry, Skyler Younger, Marc Bosse, Janos Demeter, Scott J Rodig, Alexandar Tzankov, Yury Goltsev, David Robert McIlwain, Michael Angelo, Jacob D Estes#, Garry P Nolan#
Immunity (2022)

SARS-CoV-2 infects human pancreatic β cells and elicits β cell impairment
Chien-Ting Wu*, Peter V Lidsky*, Yinghong Xiao*, Ivan T Lee*, Ran Cheng*, Tsuguhisa Nakayama*, Sizun Jiang*, Janos Demeter, Romina J Bevacqua, Charles A Chang, Robert L Whitener, Anna K Stalder, Bokai Zhu, Han Chen, Yury Goltsev, Alexandar Tzankov, Jayakar V Nayak, Garry P Nolan, Matthias S Matter#, Raul Andino#, Peter K Jackson#
Cell Metabolism (2021)

Subcellular localization of biomolecules and drug distribution by high-definition ion beam imaging
Xavier Rovira-Clavé*, Sizun Jiang*, Yunhao Bai, Bokai Zhu, Graham Barlow, Salil Bhate, Ahmet F. Coskun, Guojun Han, Chin-Min Kimmy Ho, Chuck Hitzman, Shih-Yu Chen, Felice-Alessio Bava & Garry P. Nolan#
Nature Communications (2021)

Adjacent cell marker lateral spillover compensation and reinforcement for multiplexed images
Yunhao Bai*, Bokai Zhu*, Xavier Rovira-Clave, Han Chen, Maxim Markovic, Chi Ngai Chan, Tung-Hung Su, David R McIlwain, Jacob D Estes, Leeat Keren, Garry P Nolan#, Sizun Jiang#
Frontiers in immunologys (2021)